Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs74129718 chr10:29845415 G/T 3.99E-11 178 25.53 22.05 10.3 KM Plot
PCPG rs74129721 chr10:29847287 A/C 3.99E-11 178 25.53 22.05 10.3 KM Plot
PCPG rs74129723 chr10:29850135 G/A 3.99E-11 178 25.53 22.05 10.3 KM Plot
PCPG rs74129724 chr10:29850238 A/G 3.99E-11 178 25.53 22.05 10.3 KM Plot
PCPG rs74129725 chr10:29850701 C/T 4.8E-11 177 25.53 18.7 10.3 KM Plot
PCPG rs74203691 chr16:71749267 G/C 9.25E-6 175 23.83 32.03 14.5 KM Plot
PCPG rs7420836 chr2:242583553 G/A 9.01E-11 173 25.67 25 10.3 KM Plot
PCPG rs742312 chr16:1719774 G/A 0 178 25.28 27.27 2.93 KM Plot
PCPG rs7424502 chr2:242583153 C/T 9.01E-11 173 25.67 25 10.3 KM Plot
PCPG rs74246245 chr16:56457270 C/T 0.000204 177 25.17 26.97 36.37 KM Plot
PCPG rs74251568 chr16:89903416 A/C 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs74251570 chr16:89910068 C/A 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs74267002 chr3:80451005 TAAGCAAGC/T 0.000182 171 25.4 25.92 22.52 KM Plot
PCPG rs74311713 chr16:56465661 G/GTA 0.000227 175 25.08 34.37 36.37 KM Plot
PCPG rs7431461 chr3:80599812 C/T 0.000372 178 27.6 23.53 19.53 KM Plot